Extracorporeal pathogen removal filters are in development which can bind and remove an array of blood stream pathogens. Multiple device filters are being studied; two of the more interesting ones include the use of mannose binding lectins [3] or bound heparin [4]. Reduction in the bacterial load by hemofilters could theoretically allow the host innate and adaptive immune systems to remove residual pathogens despite pan-resistance to antimicrobial agents.

Many bacteria employ some form of intercellular communication to alert pathogens about their collective bacterial concentration. If high concentrations are detected, pathogens can switch their transcription profiles to an invasive phenotype [5, 6]. An impressive array of natural and synthetic molecules can block quorum sensing and improve outcomes in experimental models of systemic infection. Whether quorum sensing inhibitors will ever be of practical clinical benefit against MDR pathogens remains the subject of considerable debate [5, 6].

The use of bacteriophages (viruses that lyse specific bacteria) as a replacement for antimicrobial agents against MDR pathogens remains an attractive option despite numerous challenges [7, 8]. Phage therapy to treat bacterial infection was introduced in the early 1920s and is still in clinical use in some regions in Eastern Europe and in Georgia [8]. Phage therapy is now regaining widespread interest as antimicrobial resistance is reaching a global crisis.

Bacteriolysis by selected lytic phages is likened to the activity of a rapidly bactericidal antibiotic against susceptible bacteria. Phage invade bacteria via attachment to surface receptors on bacteria where they replicate intracellularly and kill the bacterial host by digesting the peptidoglycan cell wall. Phage are ubiquitous in nature and are harmlessly ingested in our diet by the millions each day [8]. Phage therapy can be administered topically on open wounds or surface infections [7] or given intravenously for use in systemic infections.

Despite all the theoretical advantages of phage therapy for MDR pathogens, numerous drawbacks and practical challenges exist. The major problem is their exquisite specificity. Phage infect only one strain of bacteria, thereby precluding their use as empiric therapy for acute infections. The causative bacterium responsible for the infection must be identified; then a suitable phage therapy can be fashioned from existing stocks of phage. Stocking a hospital laboratory with a complete library of phage for every conceivable bacterial pathogen will be a major challenge indeed [8].

Immunotherapy to treat infectious diseases is not a new idea, but innovations in the generation of high affinity, human polyclonal or monoclonal antibodies against an array of molecular targets makes this an attractive approach. Active immunizations with adjuvanted, multi-eptitope bacterial vaccines are in development, as are monoclonal and polyclonal antibodies, as passive therapies against bacterial pathogens [9–11]. Transchromosomic cattle have been developed that can deliver high volumes of high quality, human polyclonal antibodies against bacterial and viral antigens [11]. Monoclonal antibodies can be designed with advantageous features and half-lives that can opsonize bacteria or inhibit virulence factors without the need for antibiotics [9, 10].

Immune adjuvants are in clinical development to booster cellular and humoral adaptive immunity of the host [12]. A number of adjuvants are under investigation, including interleukin-7, granulocyte macrophage-colony stimulating factor, programmed cell death ligand-1 antibody, among other strategies. Such immune adjuvants could benefit patients with sepsis-induced immune suppression [12].

Liposome-based cyto-toxin inhibitors [13] have been engineered to capture a variety of cell membrane lytic toxins produced by bacteria. These liposomes serve as cell membrane decoys to absorb cyto-toxins and thereby protect human cells from injury. This non-antibiotic defense mechanism is protective experimentally and could complement anti-microbial agents in treating exotoxin-producing bacterial infections.

Non-immune tolerizing events allow the host to survive and co-exist in the presence of a potential microbial threat. This represents a novel way of approaching the problem of MDR pathogens [14, 15]. Treatments would be aimed at allowing the host to compensate for pathogen presence until immune clearance removes the pathogen. An example of non-immune tolerance is seen in the differential susceptibility of mice (and likely humans) to Ebola virus disease [15]. Mouse strains vary dramatically in their susceptibility to the same strain and dose of Ebola virus. The genetic explanation is found primarily in the variation of expression of a single gene known as Tek, the human homologue for tyrosine kinase receptor for angiopoietin-1. High levels of angiopoietin1/Tie2 promote endothelial barrier protection. Ebola viruses specifically target the endothelium and kill endothelial cells. Mouse strains with high levels of Tek are better able to defend their endothelial surfaces until the adaptive immune cells (cytotoxic CD8 cells) arrive at about 7 days into infection to clear the virus. Perhaps non-immune therapeutics against infectious diseases might provide some options against MDR pathogens in clinical medicine.

The progressive spread of antibiotic resistance genes is forcing us to reconsider our treatment options against some bacterial pathogens. Treating bacterial infections will likely become more challenging in the future. We need to protect the antibiotics we already have, develop new ones, and redouble our efforts to generate novel therapies against bacterial pathogens.