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Table 2 Organisms identified by culture and PCR testing (BAL only) in patients with confirmed VAP

From: Ventilator-associated pneumonia in critically ill patients with COVID-19

Organism

ETA

(≥ 105 CFU/ml)

BAL culture

(≥ 104 CFU/ml)

BAL PCR (≤ Ct32)

Gram negative

   

Burkholderia cepacia

1

  

Citrobacter freundii

 

1

*

Citrobacter koseri

1

1

*

Coliform (not further specified)

1

  

Escherichia coli

5

3!

4!

Enterobacter asburiae

1

 

*

Enterobacter cloacae

3

  

Enterobacteraeciae (not further specified)

  

2

Haemophilus influenzae

1

 

4

Klebsiella aerogenes

2

1

*

Klebsiella pneumoniae

2

3

5

Klebsiella oxytoca

3

1

*

Proteus mirabilus

1

 

1$

Pseudomonas aeruginosa

7

3

2

Serratia liquefaciens

1

  

Serratia marcescens

1

2

5

Stenotrophomonas maltophilia

3

4

4

Gram positive

   

Staphylococcus aureus

2

2

1

Fungi

   

Aspergillus fumigatus

  

1

Non-pathogenic organisms

   

Candida albicans

6

4

4

Candida spp.

  

1

Coagulase negative Staphylococci

 

1

4

Enterococcus faecium

 

2

7

Streptococcus spp. (non-pneumoniae, non-pyogenes)

  

4

Herpes simplex virus

  

2

  1. *Sequence for the organism in question not present on the TAC
  2. !1 E. coli was detected by culture but not TAC in a patient, 2 E. coli detected by TAC without growth on culture
  3. $Sequence on TAC is for Proteus spp. rather than species specific