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Table 4 Gene Ontology analysis on common differentially expressed genes between responder and non-responder patients

From: Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

GO groups

Group-adjusted P value

GO ID

GO term

Number of genes

Leading GO term

Term-adjusted P value

Group 00

6.44E-05

GO:0050663

Cytokine secretion

22

x

1.11E-02

Group 01

7.17E-05

GO:0051248

Negative regulation of protein metabolic process

73

x

1.64E-02

Group 02

3.01E-06

GO:0002576

Platelet degranulation

19

x

4.18E-04

Group 03

6.65E-05

GO:0030168

Platelet activation

18

x

4.55E-02

Group 04

7.64E-05

GO:0002237

Response to molecule of bacterial origin

30

 

2.62E-02

Group 04

7.64E-05

GO:0071219

Cellular response to molecule of bacterial origin

23

x

5.42E-04

Group 05

5.59E-08

GO:0009967

Positive regulation of signal transduction

95

x

4.14E-04

Group 05

5.59E-08

GO:1902531

Regulation of intracellular signal transduction

107

 

2.07E-03

Group 06

1.39E-25

GO:0006887

Exocytosis

106

 

7.79E-24

Group 06

1.39E-25

GO:0042119

Neutrophil activation

78

 

7.11E-23

Group 06

1.39E-25

GO:0045055

Regulated exocytosis

102

x

5.45E-26

Group 06

1.39E-25

GO:0043299

Leukocyte degranulation

81

 

1.03E-22

Group 06

1.39E-25

GO:0043312

Neutrophil degranulation

77

 

1.32E-22

Group 07

1.64E-06

GO:0002253

Activation of immune response

54

 

3.68E-04

Group 07

1.64E-06

GO:0031349

Positive regulation of defense response

37

 

2.91E-03

Group 07

1.64E-06

GO:0002757

Immune response-activating signal transduction

47

 

5.24E-03

Group 07

1.64E-06

GO:0045088

Regulation of innate immune response

39

x

8.43E-05

Group 07

1.64E-06

GO:0045089

Positive regulation of innate immune response

31

 

3.38E-03

Group 07

1.64E-06

GO:0002218

Activation of innate immune response

28

 

4.86E-03

  1. Gene Ontology (GO) analysis was performed on 752 differentially expressed genes identified between time point 1 (T1) and T2 in both responders and non-responders. Each line reports a significantly enriched GO term with its adjusted P value, the number of genes included and the GO group to which they belong