Table 3 Number of positive findings of bacteria and fungi species at inclusion and in subsequent samples
Species | Oropharyngeal samples | Tracheal secretions | ||||||
|---|---|---|---|---|---|---|---|---|
Inclusion | Subsequent | Inclusion | Subsequent | |||||
Lp | C | Lp | C | Lp | C | Lp | C | |
1. Haemophilus influenzae | 4 | 1 | 1 | 1 | 4 | 7 | 3 | 1 |
2. Moraxella catarrhalis | 2 | 0 | 0 | 1 | 2 | 3 | 1 | 0 |
3. Beta-Streptococcus group G | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
4. Streptococcus pneumoniae | 1 | 1 | 1 | 0 | 2 | 2 | 4 | 0 |
5. Streptococcus pyogenes | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
 1–5. Airway bacteria | 9 | 3 | 3 | 1 | 9 | 13 | 8 | 1 |
6. Staphylococcus aureusa | 8 | 8 | 8 | 5 | 8 | 6 | 7 | 2 |
7. Coagulase-negative Staphylococci | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
8. Aeromonas hydrophila | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
9. Chryseobacterium indologenes | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
10. Citrobacter Koseri | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 |
11. Citrobacter freundii | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
12. Citrobacter sp. | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
13. Escherichia coli | 4 | 6 | 2 | 3 | 4 | 4 | 1 | 2 |
14. Enterobacter aerogenes | 3 | 3 | 1 | 0 | 0 | 1 | 2 | 1 |
15. Enterococcus faecalis | 1 | 3 | 8 | 8 | 0 | 3 | 2 | 6 |
16. Enterococcus faecium | 6 | 1 | 7 | 5 | 2 | 0 | 4 | 4 |
17. Enterobacter cloacae | 2 | 2 | 2 | 4 | 2 | 2 | 1 | 2 |
18. Hafnia alvei | 1 | 0 | 1 | 4 | 0 | 0 | 1 | 0 |
19. Klebsiella oxytoca | 0 | 3 | 2 | 1 | 0 | 6 | 2 | 1 |
20. Klebsiella pneumoniae | 0 | 3 | 4 | 1 | 0 | 3 | 4 | 1 |
21. Morganella morgani | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
22. Proteus mirabilis | 0 | 1 | 3 | 1 | 1 | 1 | 0 | 1 |
23. Proteus vulgaris | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 |
24. Pseudomonas aeruginosa | 0 | 2 | 2 | 3 | 2 | 3 | 0 | 2 |
25. Pseudomonas sp. | 0 | 0 | 1 | 1 | 0 | 1 | 2 | 0 |
26. Serratia marcescens | 2 | 1 | 1 | 0 | 0 | 0 | 3 | 0 |
27. Serratia sp. | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
28. Stenotroph. maltophilia | 2 | 0 | 4 | 7 | 1 | 1 | 3 | 2 |
29. Streptococcus agalactiae | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 1 |
30. Streptococcus dysgalactiae | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
31. Anaerobic mixed flora | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
 7–31. Enteric bacteria | 24 | 28 | 43 | 42 | 14 | 27 | 28 | 27 |
32. Candida albicans | 12 | 16 | 17 | 20 | 9 | 14 | 12 | 14 |
33. Candida dubliniensis | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 |
34. Candida glabrata | 0 | 0 | 2 | 3 | 1 | 0 | 1 | 2 |
35. Candida guilliermondii | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
36. Candida parapsilosis | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 |
37. Candida tropicalis | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
38. Aspergillus fumigatus | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 |
 32–38. Fungi | 13 | 16 | 24 | 24 | 12 | 16 | 16 | 17 |